Text mining genotypephenotype relationships from biomedical. Database, the journal of biological databases and curation, was launched in 2010 to support the growing need of the research community to discuss a range of issues related to the creation, development and maintenance of biological databases, and to strengthen communication between database developers, curators and users. Bibliographic content of database the journal of biological databases and curation. The journal of biological databases and curation are provided here courtesy of oxford university press support center support center external link. Many standalone desktop software suites exist to visualize single nucleotide polymorphisms snp diversity, but webbased software that can be easily implemented. The journal of biological databases and curation provides an open access platform for the presentation of novel ideas in database research surrounding biological information, and aims to help strengthen the bridge between database developers, curators, and users. The journal was established in 2009 with david landsman as the editorinchief.
Many standalone desktop software suites exist to visualize single nucleotide polymorphisms snp diversity, but webbased software that can be easily implemented and used for biological databases is absent. Ten simple rules for developing public biological databases. Linking tissues to phenotypes using gene expression. Several projects aim at providing this information by manually curating such genotypephenotype relationships in organized databases using data from clinical trials and biomedical literature. Accepting that the archiving, curation, analysis and understanding of all of this data is a challenge, database. Given that software is a fundamental part of doing science in the digital age. An introduction to biological databases marieclaude. The journal of biological databases and curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the. For instance, information about antidepressant drugs can be obtained from various sources and, after checking. Distributed and parallel databases provides such a focus for the presentation and dissemination of new research results. Agricultural and biological sciences miscellaneous.
Biological target a biological target is a biopolymer. Good journals for publishing biological database paper. November 21, 20 pascale gaudet the international society for. There is a wealth of valuable chemical information in publicly available databases for use by scientists undertaking drug discovery. Distributed and parallel databases provides such a focus for the presentation and dissemination of new research results, systems development efforts, and user experiences in distributed and parallel database systems. The journal of biological databases and curation publication type. Abstractthe etumour et multicentre project gathered in vivo and. Solcyc has been recently extended by taxonspecific databases, i. Particular note is made of the efficacy in distribution of curation and outreach staff at 3 different locations, which are additional to the locations for database management and software development in iowa, and that of a key collaborator, the maize genetics cooperation stock center in illinois. The journal of biological databases and curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between find out more. The use of distributed and parallel database technology in managing biological.
The journal of biological databases and curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users. Snpversity was created to answer this need by building an opensource visualization tool that can be. The implementation of this strategy will significantly advance the curation status of all organismspecific databases in solcyc resulting in the improvement on database accuracy, data analysis and visualization of biochemical networks in those species. Linking tissues to phenotypes using gene expression profiles. However finite curation resource, limitations of chemical structure.
Database the journal of biological databases and curation citations. How about database, a journal for biological databases and curation. Curated databases are of particular importance to digital librarians because the central component of a digital library its catalogue or metadata is very likely to be a curated database. The journal of biological databases and curation, volume 2012.
Bibliographic content of database the journal of biological databases and curation, volume 2017. Oellrich a, sanger mouse genetics project and smedley d. Agricultural and biological sciences miscellaneous 2010. Bibliographic content of database the journal of biological databases and curation, volume 2011. The following is a list of journals which accept submissions that are primarily about the software, and not necessarily on new algorithms or new science. All submissions should describe worthy resources for the scientific research endeavor. The isb international society for biocuration page 8. A collection of structured searchable index table of contents updated periodically release new edition crossreferenced hyperlinks links with other db data includes also associated tools software. Database, the journal of biological databases and curation. The sequences submitted to any of those databases are shared between them, so any sequence could be retrieved in the european or the american database. The journal nucleic acids research regularly publishes special issues on biological databases and has a list of such databases. A hybrid human and machine resource curation pipeline for.
But they differ in the tools to search and browse the data and in some databases that provide extra information to the raw sequences like. A collection of structured searchable index table of contents updated. The journal of biological databases and curation vols. A hybrid human and machine resource curation pipeline for the neuroscience information. The 2018 issue has a list of about 180 such databases and updates to previously described databases. The term data curation is sometimes used in the context of biological databases, where specific biological information is firstly obtained from a range of research articles and then stored within a specific category of database. An important resource for finding biological databases is a special yearly issue of the journal nucleic acids research nar. Sjr is a measure of scientific influence of journals that. The term data curation is sometimes used in the context of biological databases, where specific biological information is firstly obtained from a range of research articles and then stored within a. Sjr is a measure of scientific influence of journals that accounts for both the number of citations received by a journal and the. Database the journal of biological databases and curation. Abstract wormbase, dictybase and the arabidopsis information resource tair are model organism databases containing information about caenorhabditis elegans and other nematodes, the social amoeba dictyostelium discoideum and related dictyostelids and the flowering plant arabidopsis thaliana. The paper describes the construction of the database as well as the accompanying software tool. Database, the journal of biological databases and curation, is now the official journal of the international society for biocuration.
In addition, the journal will provide a platform for the description of novel advances in the field of biocuration and promote the use of information from biological databases to assist in the planning and design of. Resource curation pipeline for the neuroscience information framework. November 21, 20 pascale gaudet the international society for biocuration isb was created to promote biocuration, the product of multidisciplinary teams of database curators, software developers and. Author summary to provide personalized health care it is important to understand patients genomic variations and the effect these variants have in protecting or predisposing patients to disease. Most large databases, and consequently curation jobs, are based in europe and the united states, but that is changing, says tadashi imanishi, leader of the integrated database and systemsbiology.
The journal of biological databases and curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database publishes a number of virtual issues focusing on different areas of interest and research from relevant conferences. The journal of biological databases and curation file. Abstract wormbase, dictybase and the arabidopsis information resource tair are model organism. A new forum for biological databases and curation article pdf available in database the journal of biological databases and curation 2009.